Abundance definitions: Chinook

Table that contains Chinook abundance definitions by stock aggregate, abundance type (TR: Terminal Run; OA: Ocean Abundance), time lag (5YA: 5-year running average), and hypothesis (SR: Southern Resident Killer Whale; NR: Northern Resident Killer Whale) and abundance ID.

Download Chinook_Ab_Definitions_R.csv.

TimeSeries Stock Ab.Type lag SR_Hyp NR_Hyp Ab_ID
ALL1a_TR_0 Fraser Early+Puget Sound+Fraser Late Terminal run 0 1a 2b 1
ALL1a_TR_1 Fraser Early+Puget Sound+Fraser Late Terminal run 1 1a 2b 1
ALL1a_TR_2 Fraser Early+Puget Sound+Fraser Late Terminal run 2 1a 2b 1
ALL1a_TR_5YA Fraser Early+Puget Sound+Fraser Late Terminal run 5YA 1a 2b 1
ALL1b_OA_0 Fraser Early+Puget Sound+Columbia UpRiver Brights Ocean Abundance 0 NA 1b 2
ALL1b_OA_1 Fraser Early+Puget Sound+Columbia UpRiver Brights Ocean Abundance 1 NA 1b 2
ALL1b_OA_2 Fraser Early+Puget Sound+Columbia UpRiver Brights Ocean Abundance 2 NA 1b 2
ALL1b_OA_5YA Fraser Early+Puget Sound+Columbia UpRiver Brights Ocean Abundance 5YA NA 1b 2
ALL1b_TR_0 NBC+CBC+WCVI+UGS+LGS Terminal run 0 NA 1b 1
ALL1b_TR_1 NBC+CBC+WCVI+UGS+LGS Terminal run 1 NA 1b 1
ALL1b_TR_2 NBC+CBC+WCVI+UGS+LGS Terminal run 2 NA 1b 1
ALL1b_TR_5YA NBC+CBC+WCVI+UGS+LGS Terminal run 5YA NA 1b 1
ALL2a_OA_0 WCVI+URB+FL+OC+PS Ocean Abundance 0 2a NA 2
ALL2a_OA_1 WCVI+URB+FL+OC+PS Ocean Abundance 1 2a NA 2
ALL2a_OA_2 WCVI+URB+FL+OC+PS Ocean Abundance 2 2a NA 2
ALL2a_OA_5YA WCVI+URB+FL+OC+PS Ocean Abundance 5YA 2a NA 2
ALL2a_TR_0 SF+KLF+COLf+COLs+OC+WCVI Terminal run 0 2a NA 1
ALL2a_TR_1 SF+KLF+COLf+COLs+OC+WCVI Terminal run 1 2a NA 1
ALL2a_TR_2 SF+KLF+COLf+COLs+OC+WCVI Terminal run 2 2a NA 1
ALL2a_TR_5YA SF+KLF+COLf+COLs+OC+WCVI Terminal run 5YA 2a NA 1
ALL2b_OA_0 WCVI+FL+OC Ocean Abundance 0 NA 2b 2
ALL2b_OA_1 WCVI+FL+OC Ocean Abundance 1 NA 2b 2
ALL2b_OA_2 WCVI+FL+OC Ocean Abundance 2 NA 2b 2
ALL2b_OA_5YA WCVI+FL+OC Ocean Abundance 5YA NA 2b 2
ALL2b_TR_0 FE+PS+FL+COLf+COLs+OC Terminal run 0 NA 2b 1
ALL2b_TR_1 FE+PS+FL+COLf+COLs+OC Terminal run 1 NA 2b 1
ALL2b_TR_2 FE+PS+FL+COLf+COLs+OC Terminal run 2 NA 2b 1
ALL2b_TR_5YA FE+PS+FL+COLf+COLs+OC Terminal run 5YA NA 2b 1
CBC_TR_0 Central British Columbia (Areas 6-10) Terminal run 0 NA 1b 1
CBC_TR_1 Central British Columbia (Areas 6-10) Terminal run 1 NA 1b 1
CBC_TR_2 Central British Columbia (Areas 6-10) Terminal run 2 NA 1b 1
CBC_TR_5YA Central British Columbia (Areas 6-10) Terminal run 5YA NA 1b 1
COLf_TR_0 Columbia Fall (UpRiver Brights+ Tule) Terminal run 0 2a 2b 1
COLf_TR_1 Columbia Fall (UpRiver Brights+ Tule) Terminal run 1 2a 2b 1
COLf_TR_2 Columbia Fall (UpRiver Brights+ Tule) Terminal run 2 2a 2b 1
COLf_TR_5YA Columbia Fall (UpRiver Brights+ Tule) Terminal run 5YA 2a 2b 1
COLs_TR_0 Columbia Spring/Summer Terminal run 0 2a 2b 1
COLs_TR_1 Columbia Spring/Summer Terminal run 1 2a 2b 1
COLs_TR_2 Columbia Spring/Summer Terminal run 2 2a 2b 1
COLs_TR_5YA Columbia Spring/Summer Terminal run 5YA 2a 2b 1
CW_OA_0 Coastwide (excluding SEAK) Ocean Abundance 0 2a 2b 2
CW_OA_1 Coastwide (excluding SEAK) Ocean Abundance 1 2a 2b 2
CW_OA_2 Coastwide (excluding SEAK) Ocean Abundance 2 2a 2b 2
CW_OA_5YA Coastwide (excluding SEAK) Ocean Abundance 5YA 2a 2b 2
CW2a_TR_0 Coastwide (excluding SEAK, NBC and CBC) Terminal run 0 2a NA 1
CW2a_TR_1 Coastwide (excluding SEAK, NBC and CBC) Terminal run 1 2a NA 1
CW2a_TR_2 Coastwide (excluding SEAK, NBC and CBC) Terminal run 2 2a NA 1
CW2a_TR_5YA Coastwide (excluding SEAK, NBC and CBC) Terminal run 5YA 2a NA 1
CW2b_TR_0 Coastwide (excluding Sacramento Fall and Klamath Fall) Terminal run 0 NA 2b 1
CW2b_TR_1 Coastwide (excluding Sacramento Fall and Klamath Fall) Terminal run 1 NA 2b 1
CW2b_TR_2 Coastwide (excluding Sacramento Fall and Klamath Fall) Terminal run 2 NA 2b 1
CW2b_TR_5YA Coastwide (excluding Sacramento Fall and Klamath Fall) Terminal run 5YA NA 2b 1
FE_OA_0 Fraser Early Ocean Abundance 0 NA 1b 2
FE_OA_1 Fraser Early Ocean Abundance 1 NA 1b 2
FE_OA_2 Fraser Early Ocean Abundance 2 NA 1b 2
FE_OA_5YA Fraser Early Ocean Abundance 5YA NA 1b 2
FE_TR_0 Fraser Early (Spring and Summer) Terminal run 0 1a 2b 1
FE_TR_1 Fraser Early (Spring and Summer) Terminal run 1 1a 2b 1
FE_TR_2 Fraser Early (Spring and Summer) Terminal run 2 1a 2b 1
FE_TR_5YA Fraser Early (Spring and Summer) Terminal run 5YA 1a 2b 1
FE2_TR_0 Fraser Early (Spring) Terminal run 0 1a 2b 1
FE2_TR_1 Fraser Early (Spring) Terminal run 1 1a 2b 1
FE2_TR_2 Fraser Early (Spring) Terminal run 2 1a 2b 1
FE2_TR_5YA Fraser Early (Spring) Terminal run 5YA 1a 2b 1
FE3_TR_0 Fraser Early (Summer) Terminal run 0 1a 2b 1
FE3_TR_1 Fraser Early (Summer) Terminal run 1 1a 2b 1
FE3_TR_2 Fraser Early (Summer) Terminal run 2 1a 2b 1
FE3_TR_5YA Fraser Early (Summer) Terminal run 5YA 1a 2b 1
FEPS_TR_0 Fraser Early + Puget Sound Terminal run 0 1a 2b 1
FEPS_TR_1 Fraser Early + Puget Sound Terminal run 1 1a 2b 1
FEPS_TR_2 Fraser Early + Puget Sound Terminal run 2 1a 2b 1
FEPS_TR_5YA Fraser Early + Puget Sound Terminal run 5YA 1a 2b 1
FL_OA_0 Fraser Late Ocean Abundance 0 2a 2b 2
FL_OA_1 Fraser Late Ocean Abundance 1 2a 2b 2
FL_OA_2 Fraser Late Ocean Abundance 2 2a 2b 2
FL_OA_5YA Fraser Late Ocean Abundance 5YA 2a 2b 2
FL_TR_0 Fraser Late Terminal run 0 1a 2b 1
FL_TR_1 Fraser Late Terminal run 1 1a 2b 1
FL_TR_2 Fraser Late Terminal run 2 1a 2b 1
FL_TR_5YA Fraser Late Terminal run 5YA 1a 2b 1
KLF_TR_0 Klamath Fall Terminal run 0 2a NA 1
KLF_TR_1 Klamath Fall Terminal run 1 2a NA 1
KLF_TR_2 Klamath Fall Terminal run 2 2a NA 1
KLF_TR_5YA Klamath Fall Terminal run 5YA 2a NA 1
LGS_TR_0 Lower Georgia Strait Terminal run 0 NA 1b 1
LGS_TR_1 Lower Georgia Strait Terminal run 1 NA 1b 1
LGS_TR_2 Lower Georgia Strait Terminal run 2 NA 1b 1
LGS_TR_5YA Lower Georgia Strait Terminal run 5YA NA 1b 1
NBC_TR_0 Northern British Columbia (Areas 1-5) Terminal run 0 NA 1b 1
NBC_TR_1 Northern British Columbia (Areas 1-5) Terminal run 1 NA 1b 1
NBC_TR_2 Northern British Columbia (Areas 1-5) Terminal run 2 NA 1b 1
NBC_TR_5YA Northern British Columbia (Areas 1-5) Terminal run 5YA NA 1b 1
OC_OA_0 Oregon Coastal Ocean Abundance 0 2a 2b 2
OC_OA_1 Oregon Coastal Ocean Abundance 1 2a 2b 2
OC_OA_2 Oregon Coastal Ocean Abundance 2 2a 2b 2
OC_OA_5YA Oregon Coastal Ocean Abundance 5YA 2a 2b 2
OC_TR_0 Oregon Coastal Terminal run 0 2a 2b 1
OC_TR_1 Oregon Coastal Terminal run 1 2a 2b 1
OC_TR_2 Oregon Coastal Terminal run 2 2a 2b 1
OC_TR_5YA Oregon Coastal Terminal run 5YA 2a 2b 1
PS_OA_0 Puget Sound Ocean Abundance 0 2a 1b 2
PS_OA_1 Puget Sound Ocean Abundance 1 2a 1b 2
PS_OA_2 Puget Sound Ocean Abundance 2 2a 1b 2
PS_OA_5YA Puget Sound Ocean Abundance 5YA 2a 1b 2
PS_TR_0 Puget Sound (Summer and Fall) Terminal run 0 1a 2b 1
PS_TR_1 Puget Sound (Summer and Fall) Terminal run 1 1a 2b 1
PS_TR_2 Puget Sound (Summer and Fall) Terminal run 2 1a 2b 1
PS_TR_5YA Puget Sound (Summer and Fall) Terminal run 5YA 1a 2b 1
SF_TR_0 Sacramento Fall Terminal run 0 2a NA 1
SF_TR_1 Sacramento Fall Terminal run 1 2a NA 1
SF_TR_2 Sacramento Fall Terminal run 2 2a NA 1
SF_TR_5YA Sacramento Fall Terminal run 5YA 2a NA 1
UGS_TR_0 Upper Georgia Strait Terminal run 0 NA 1b 1
UGS_TR_1 Upper Georgia Strait Terminal run 1 NA 1b 1
UGS_TR_2 Upper Georgia Strait Terminal run 2 NA 1b 1
UGS_TR_5YA Upper Georgia Strait Terminal run 5YA NA 1b 1
URB_OA_0 Columbia UpRiver Brights Ocean Abundance 0 2a 1b 2
URB_OA_1 Columbia UpRiver Brights Ocean Abundance 1 2a 1b 2
URB_OA_2 Columbia UpRiver Brights Ocean Abundance 2 2a 1b 2
URB_OA_5YA Columbia UpRiver Brights Ocean Abundance 5YA 2a 1b 2
WCVI_OA_0 West Coast Vancouver Island Ocean Abundance 0 2a 2b 2
WCVI_OA_1 West Coast Vancouver Island Ocean Abundance 1 2a 2b 2
WCVI_OA_2 West Coast Vancouver Island Ocean Abundance 2 2a 2b 2
WCVI_OA_5YA West Coast Vancouver Island Ocean Abundance 5YA 2a 2b 2
WCVI_TR_0 West Coast Vancouver Island Terminal run 0 2a 1b 1
WCVI_TR_1 West Coast Vancouver Island Terminal run 1 2a 1b 1
WCVI_TR_2 West Coast Vancouver Island Terminal run 2 2a 1b 1
WCVI_TR_5YA West Coast Vancouver Island Terminal run 5YA 2a 1b 1

Disclaimer

This website is a demonstrator for the integration of several informatics technologies useful in "in-silico" biodiversity science: Scratchpads, Taverna Player and BioVeL infrastructure for executing workflows. This particular example makes use of population census data for Killer Whales and abundance data for Chinook Salmon in the north-east Pacific Ocean, which has kindly been provided by Antonio Velez-Espino of Fisheries and Oceans Canada. Please do not rely on the data or results information provided for any actual scientific, conservation or policy use. Mistakes herein (of which there are several) are solely the responsibility of the technical parties working on the technology integration. These include: Cardiff University, University of Manchester and the Natural History Museum, London.

Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith