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This website is a demonstrator for the integration of several informatics technologies useful in "in-silico" biodiversity science: Scratchpads, Taverna Player and BioVeL infrastructure for executing workflows. This particular example makes use of population census data for Killer Whales and abundance data for Chinook Salmon in the north-east Pacific Ocean, which has kindly been provided by Antonio Velez-Espino of Fisheries and Oceans Canada. Please do not rely on the data or results information provided for any actual scientific, conservation or policy use. Mistakes herein (of which there are several) are solely the responsibility of the technical parties working on the technology integration. These include: Cardiff University, University of Manchester and the Natural History Museum, London.
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The Class Mammalia includes about 5000 species placed in 26 orders. Systematists do not yet agree on the exact number or on how some orders and families are related to others. The Animal Diversity Web generally follows the arrangement used by Wilson and Reeder (2005). Exciting new information, however, coming from phylogenies based on molecular evidence and from new fossils, is changing our understanding of many groups. For example, skunks have been placed in the new family Mephitidae, separate from their traditional place within the Mustelidae (Dragoo and Honeycutt 1997, Flynn et al., 2005). The Animal Diversity Web follows this revised classification. Whales almost certainly arose from within the Artiodactyla (Matthee et al. 2001; Gingerich et al. 2001). The traditional subdivision of the Chiroptera into megabats and microbats may not accurately reflect evolutionary history (Teeling et al. 2002). Even more fundamentally, molecular evidence suggests that monotremes (Prototheria, egg-laying mammals) and marsupials (Metatheria) may be more closely related to each other than to placental mammals (Eutheria) (Janke et al. 1997), and placental mammals may be organized into larger groups (Afrotheria, Laurasiatheria, Boreoeutheria, etc.) that are quite different from traditional ones (Murphy et al. 2001).
All mammals share at least three characteristics not found in other animals: 3 middle ear bones,
hair, and the production of milk by modified sweat glands called
mammary glands. The three middle ear bones, the malleus, incus, and stapes (more commonly referred to as the hammer, anvil, and stirrup) function in the transmission of vibrations from the tympanic membrane (eardrum) to the inner ear. The malleus and incus are derived from bones present in the lower jaw of mammalian ancestors. Mammalian hair is present in all mammals at some point in their development. Hair has several functions, including insulation, color patterning, and aiding in the sense of touch. All female mammals produce milk from their mammary glands in order to nourish newborn offspring. Thus, female mammals invest a great deal of energy caring for each of their offspring, a situation which has important ramifications in many aspects of mammalian evolution, ecology, and behavior.
Although mammals share several features in common (see Physical Description and Systematics and Taxonomic History), Mammalia contains a vast diversity of forms. The smallest mammals are found among the shrews and bats, and can weigh as little as 3 grams. The largest mammal, and indeed the largest animal to ever inhabit the planet, is the blue whale, which can weigh 160 metric tons (160,000 kg). Thus, there is a 53 million-fold difference in mass between the largest and smallest mammals! Mammals have evolved to exploit a large variety of ecological niches and life history strategies and, in concert, have evolved numerous adaptations to take advantage of different lifestyles. For example, mammals that fly, glide, swim, run, burrow, or jump have evolved morphologies that allow them to locomote efficiently; mammals have evolved a wide variety of forms to perform a wide variety of functions.
- Nowak, R. 1991. Walker's Mammals of the World. Baltimore: Johns Hopkins University Press.
- Vaughan, T., J. Ryan, N. Czaplewski. 2000. Mammalogy, 4th Edition. Toronto: Brooks Cole.
- Gingerich, P., M. ul Haq, I. Zalmout, I. Khan, M. Malkani. 2001. Origin of whales from early artiodactyls: Hands and feet of Eocene Protocetidae from Pakistan. Science, 293: 2239-2242.
- Dragoo, J., R. Honeycutt. 1997. Systematics of mustelid-like carnivores. Journal of Mammalogy, 78: 426-443.
- Janke, A., X. Xu, U. Arnason. 1997. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, marsupialia, and Eutheria. Proc. National Academy of Sciences, 94: 1276-1281.
- Matthee, C., J. Burzlaff, J. Taylor, S. Davis. 2001. Mining the mammalian genome for artiodactyl systematics. Systematic Biology, 50: 367-390.
- Murphy, W., E. Eizirik, S. O'Brien, O. Madsen, M. Scally, C. Douady, E. Teeling, O. Ryder, M. Stanhope, W. de Jong, M. Springer. 2001. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science, 294: 2348-2351.
- Teeling, E., O. Madsen, R. Van Den Bussche, W. de Jong, M. Stanhope, M. Springer. 2002. Microbat paraphyly and the convergent evolution of a key innovation in Old World rhinolophoid microbats. Proc. National Academy of Sciences, 99: 1431-1436.
- Wilson, D., D. Reeder. 1993. Mammal Species of the World. Washington D.C.: Smithsonian Institution Press.
- Flynn, J., J. Finarelli, S. Zehr, J. Hsu, M. Nedbal. 2005. Molecular phylogeny of the Carnivora (Mammalia): assessing the impact of increased sampling on resolving enigmatic relationships. Systematic Biology, 54/2: 317-337.
- Klima, M., W. Maier. 1990. Body Structure. Pp. 58-84 in B Grzimek, ed. Grzimek's Encyclopedia of Mammals, Vol. 1, 1 Edition. New York: Mcgraw-Hill.
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Rights holder/Author | ©1995-2012, The Regents of the University of Michigan and its licensors |
Source | http://animaldiversity.ummz.umich.edu/site/accounts/information/Mammalia.html |
Mammals can be found on all continents, in all oceans, and on many oceanic islands of the world.
Biogeographic Regions: nearctic (Introduced , Native ); palearctic (Introduced , Native ); oriental (Introduced , Native ); ethiopian (Introduced , Native ); neotropical (Introduced , Native ); australian (Introduced , Native ); antarctica (Native ); oceanic islands (Introduced , Native ); arctic ocean (Native ); indian ocean (Native ); atlantic ocean (Native ); pacific ocean (Native ); mediterranean sea (Native )
Other Geographic Terms: cosmopolitan
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Rights holder/Author | ©1995-2012, The Regents of the University of Michigan and its licensors |
Source | http://animaldiversity.ummz.umich.edu/site/accounts/information/Mammalia.html |
Cell metabolism produces heat: mammals
Cells within brown adipose tissues of mammals and birds produce heat by uncoupling of mitochondrial respiration.
"Mammals and birds are endotherms and respond to cold exposure by the means of regulatory thermogenesis, either shivering or non-shivering. In this latter case, waste of cell energy as heat can be achieved by uncoupling of mitochondrial respiration. Uncoupling proteins [UCPs], which belong to the mitochondrial carrier family, are able to transport protons and thus may assume a thermogenic function. The mammalian UCP1 physiological function is now well understood and gives to the brown adipose tissue the capacity for heat generation. But is it really the case for its more recently discovered isoforms UCP2 and UCP3? Additionally, whereas more and more evidence suggests that non-shivering also exists in birds, is the avian UCP also involved in response to cold exposure? In this review, we consider the latest advances in the field of UCP biology and present putative functions for UCP1 homologues." (Mozo et al. 2005:227)
Learn more about this functional adaptation.
- Mozo, J.; Emre, Y.; Bouillaud, F.; Ricquier, D.; Criscuolo, F. 2005. Thermoregulation: What role for UCPs in mammals and birds?. Bioscience Reports. 25(3-4): 227-249.
License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/b1dd13c666de0ccb6beae9896d04fe71 |
Eyelids cleanse eyes: mammals
The eyelids of mammals provide lubrication for the eye using teardrops that are applied during blinking.
"Being a particularly delicate instrument, the eye needs protection -- usually, an eyelid. Most mammals have two eyelids, one above and one below, but some - such as horses and deer - have a third, inner eyelid, the nictitating membrane, which may move upwards or sideways across the eyeball. Both types of eyelid can be closed to protect the eye from a blow, or from dirt; in closing - blinking - they wipe the eyeball clean and lubricate it with teardrops." (Foy and Oxford Scientific Films 1982:124)
Learn more about this functional adaptation.
- Foy, Sally; Oxford Scientific Films. 1982. The Grand Design: Form and Colour in Animals. Lingfield, Surrey, U.K.: BLA Publishing Limited for J.M.Dent & Sons Ltd, Aldine House, London. 238 p.
License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/8e0fca37d1ca38ed7f813aee61a18f6f |
Males larger than females in 45% of species, and average 18% heavier than females overall; females slightly larger in only 3 orders; Sexual Dimorphism in shape, color, pelage, tooth size, horns and antlers; females have mammary glands; intromittent organs and scrotal sacks often externally obvious in males.
License | http://creativecommons.org/publicdomain/zero/1.0/ |
Rights holder/Author | Fairbairn, 2013 |
Source | http://datadryad.org/resource/doi:10.5061/dryad.n48cm |
Skin properties derive from arrangement of components: mammals
The skin of mammals may derive its unique mechanical properties and other characteristics from the arrangement of its stratum corneum keratin intermediate filaments into cubic rod-packing symmetry.
"A new model for stratum corneum keratin structure, function, and formation is presented. The structural and functional part of the model, which hereafter is referred to as 'the cubic rod-packing model', postulates that stratum corneum keratin intermediate filaments are arranged according to a cubic-like rod-packing symmetry with or without the presence of an intracellular lipid membrane with cubic-like symmetry enveloping each individual filament. The new model could account for (i) the cryo-electron density pattern of the native corneocyte keratin matrix, (ii) the X-ray diffraction patterns, (iii) the swelling behavior, and (iv) the mechanical properties of mammalian stratum corneum. The morphogenetic part of the model, which hereafter is referred to as 'the membrane templating model', postulates the presence in cellular space of a highly dynamic small lattice parameter (<30 nm) membrane structure with cubic-like symmetry, to which keratin is associated. It further proposes that membrane templating, rather than spontaneous self-assembly, is responsible for keratin intermediate filament formation and dynamics. The new model could account for (i) the cryo-electron density patterns of the native keratinocyte cytoplasmic space, (ii) the characteristic features of the keratin network formation process, (iii) the dynamic properties of keratin intermediate filaments, (iv) the close lipid association of keratin, (v) the insolubility in non-denaturating buffers and pronounced polymorphism of keratin assembled in vitro, and (vi) the measured reduction in cell volume and hydration level between the stratum granulosum and stratum corneum. Further, using cryo-transmission electron microscopy on native, fully hydrated, vitreous epidermis we show that the subfilametous [sic] keratin electron density pattern consists, both in corneocytes and in viable keratinocytes, of one axial subfilament surrounded by an undetermined number of peripheral subfilaments forming filaments with a diameter of ~8 nm." (Norlén and Al-Amoudi 2004:715)
Learn more about this functional adaptation.
- Foy, Sally; Oxford Scientific Films. 1982. The Grand Design: Form and Colour in Animals. Lingfield, Surrey, U.K.: BLA Publishing Limited for J.M.Dent & Sons Ltd, Aldine House, London. 238 p.
- Norlen, L.; Al-Amoudi, A. 2004. Stratum Corneum Keratin Structure, Function, and Formation: The Cubic Rod-Packing and Membrane Templating Model. Journal of Investigative Dermatology. 123(4): 715-732.
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Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/ceb9656c9689cc99b2188256a9a0bae9 |
White blood cells roll and stick: mammals
White blood cells of mammals roll along blood vessel walls, and anchor when they find an infection or cell damage via cell-adhesion molecules (CAMs) with variable affinity.
"Dan Hammer of the Univ. of Pennsylvania in Philadelphia is studying how white blood cells roll their way through the bloodstream, yet are able to anchor themselves where they are needed. He hopes that if he can devise materials that mimic the cells' roll-and-stick ability, he'll be able to devise a new targeted drug-delivery system. White blood cells have surface proteins called selectins that stick out of the cell surface. Fluid pushes the cell along--bonds form in front and are broken in the back, resulting in the cartwheeling motion." (Courtesy of the Biomimicry Guild)
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Learn more about this functional adaptation.
- Pennisi, E. 2002. Biology reveals new ways to hold on tight. Science. 296(5566): 250-251.
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Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/7e3ddd7679a4fb7ef43300a5e5778584 |
All mammals have hair at some point during their development, and most mammals have hair their entire lives. Adults of some species lose most or all of their hair but, even in mammals like whales and dolphins, hair is present at least during some phase of ontogeny. Mammalian hair, made of a protein called keratin, serves at least four functions. First, it slows the exchange of heat with the environment (insulation). Second, specialized hairs (whiskers or "vibrissae") have a sensory function, letting an animal know when it is in contact with an object in its environment. Vibrissae are often richly innervated and well-supplied with muscles that control their position. Third, hair affects appearance through its color and pattern. It may serve to camouflage predators or prey, to warn predators of a defensive mechanism (for example, the conspicuous color pattern of a skunk is a warning to predators), or to communicate social information (for example, threats, such as the erect hair on the back of a wolf; sex, such as the different colors of male and female capuchin monkeys; or the presence of danger, such as the white underside of the tail of a white-tailed deer). Fourth, hair provides some protection, either simply by providing an additional protective layer (against abrasion or sunburn, for example) or by taking on the form of dangerous spines that deter predators (porcupines, spiny rats, others).
Mammals are typically characterized by their highly differentiated teeth. Teeth are replaced just once during an individual's life (a condition called
diphyodonty). Other characteristics found in most mammals include: a
lower jaw made up of a single bone, the dentary; four-chambered hearts; a secondary palate separating air and food passages in the mouth; a muscular diaphragm separating thoracic and abdominal cavities; a highly developed brain; endothermy and homeothermy; separate sexes with the sex of an embryo being determined by the presence of a Y or 2 X chromosomes; and internal fertilization.
Often, characteristics of skulls and dentition are used to define and differentiate mammalian groups. To make these easier to comprehend within the accounts of lower mammalian taxa, we provide links to dorsal,
ventral, and
lateral views of the skull of a dog on which the major bones, foramina, and processes have been labelled. Closeups of the
basicranial region,
orbital region, and
lingual and
labial views of a mandible are also available. A partially labeled
full skeleton of a raccoon has also been prepared.
Other Physical Features: endothermic ; heterothermic ; homoiothermic; bilateral symmetry ; polymorphic ; venomous
Sexual Dimorphism: sexes alike; female larger; male larger; sexes colored or patterned differently; female more colorful; male more colorful; sexes shaped differently; ornamentation
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Rights holder/Author | ©1995-2012, The Regents of the University of Michigan and its licensors |
Source | http://animaldiversity.ummz.umich.edu/site/accounts/information/Mammalia.html |
Bones' supporting beams provide strength: birds and mammals
Thigh bones of birds and mammals withstand strain as size increases by reorganizing internal structure of trabeculae ("little beams").
"Many bones are supported internally by a latticework of trabeculae [Latin: "little beams"; they provide structural support, especially near joints]...We analysed trabecular geometry in the femora of 90 terrestrial mammalian and avian species with body masses ranging from 3 g to 3400 kg. We found that bone volume fraction does not scale substantially with animal size, while trabeculae in larger animals’ femora are thicker, further apart and fewer per unit volume than in smaller animals...[T]rabecular scaling does not alter the bulk stiffness of trabecular bone, but does alter strain within trabeculae under equal applied loads. Allometry of bone’s trabecular tissue may contribute to the skeleton’s ability to withstand load, without incurring the physiological or mechanical costs of increasing bone mass." (Doube et al. 2011:3067)
"Trabecular bone scales allometrically, within physiological limits to trabecular size. Reorganization of bones’ internal structure might protect trabeculae from increased strains owing to large body size, representing a mass-efficient strategy for maintaining bone strain in a safe range at the trabecular scale. This may represent a new approach to designing cellular solids for engineered structures of differing scale." (Doube et al. 2011:3072)
Learn more about this functional adaptation.
- Doube M; Kłosowski MM; Wiktorowicz-Conroy AM; Hutchinson JR; Shefelbine SJ. 2011. Trabecular bone scales allometrically in mammals and birds. Proceedings of the Royal Society. B, Biological sciences. 278: 3067–3073.
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Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/4a5944d8c0c9feabfe127e7f79ef8427 |
Ear-flaps concentrate sound waves: mammals
The external ear-flaps of many mammals aid hearing by concentrating sound waves.
"It is only among mammals that ears become noticeable, even striking, because of the visible external ear-flaps behind the narrow opening of the outer ear tube…The most obvious use of the ear-flap, though not necessarily the most important, is to gather and concentrate sound waves." (Foy and Oxford Scientific Films 1982:167)
Learn more about this functional adaptation.
- Foy, Sally; Oxford Scientific Films. 1982. The Grand Design: Form and Colour in Animals. Lingfield, Surrey, U.K.: BLA Publishing Limited for J.M.Dent & Sons Ltd, Aldine House, London. 238 p.
License | http://creativecommons.org/licenses/by-nc/3.0/ |
Rights holder/Author | (c) 2008-2009 The Biomimicry Institute |
Source | http://www.asknature.org/strategy/62a95372011f1f01e4f7ca0560e380c1 |